![]() Therefore, a commit of a superproject also contains the name of the submodule directories, along with the current commit of these submodules. You want the version that actually works with your status of fiji. Update the checkout to latest from svn: git submodule foreach git svn rebase, or git submodule foreach git. Most of the time you do not want to have the newest coolest version of the submodule. What is the difference between calling git supmodule update from the fiji directory and changing into a submodule directory and doing a git pull? This is probably the opposite way round from what you expect from resolving conflicts while merging :) Difference between git submodule update and git pull git diff -ours shows the differences between the âmasterâ or âupstreamâ branch and the working tree.git diff -theirs shows the differences between the âserverâ branch and the working tree.If youâre using git diff -theirs and git diff -ours while rebasing then you may get confused. On branch master Changes to be committed: (use git reset HEAD .i get: error: pathspec 'deinit' did not match any. What about 1.) submodule deinit 2.) delete all pasted data 3.) git submodule init 4.) git submodule update. Downloading and pasting data should never be necessary, probably something went wrong there. Now we should be able to continue, with git rebase -continue A note on âoursâ and âtheirsâ git submodule add This simply tells Git that we are adding a submodule. So you deleted first the submodule directory and later even the submodule repo (object store). The usual sequence of commands when working inside a submodule: See the Submodules section of the Downloading and Building Fiji From Source page for details. The correct way to revert the change to the submodule, is to go to the submodule and perform git reset or git checkout there. However, to work with a submodule you must clone that repository. ![]() Checking out submodulesÄ®ach submodule is a proper full-fledged git repository, so any git commands executed within the folders of the submodule will affect that git repository, not fijiâs. ![]() Submodules, although existing as folders inside the fiji repository, are different: only the folder name, as a path pointer, is registered as belonging to fijiâs git repository, together with the current revision (âcommit nameâ, i.e. If the Git configuration variable clean.requireForce is not set to false, git clean will refuse to delete files or directories unless given -f, -n or -i. When the working tree is updated, using -recurse-submodules will also recursively reset the working tree of all active submodules according to the commit recorded in the superproject, also setting the submodules' HEAD to be detached at that commit. With git, any git command executed within any subdirectory of the repository affects the overall git repository. Submodules in Fijiįiji is hosted on a main git repository which contains several declared submodules such as TrakEM2. When in doubt, ask for help from the community. This section is out of date, potentially misleading or invalid.
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